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Compound Deep-Dives

SS-31 (Elamipretide): Mitochondrial Targeting and Cardioprotection Research

Investigating SS-31 — a Szeto-Schiller tetrapeptide that selectively targets the inner mitochondrial membrane, studied for its role in mitochondrial bioenergetics and cardioprotection.

Malice Research LabAugust 11, 2026

SS-31: Design and Discovery

SS-31 (also known as elamipretide or MTP-131) belongs to the Szeto-Schiller class of aromatic-cationic tetrapeptides. These peptides were designed to selectively target and concentrate in the inner mitochondrial membrane, achieving cellular concentrations 100- to 1000-fold higher than extracellular levels. This remarkable mitochondrial tropism is driven by the negative membrane potential across the inner mitochondrial membrane (−150 to −180 mV).

Cardiolipin: The Molecular Target

The primary molecular target of SS-31 is cardiolipin, a phospholipid unique to the inner mitochondrial membrane. Cardiolipin plays critical roles in mitochondrial function:

  • Electron transport chain: Stabilizes respiratory supercomplexes (Complex I/III/IV)
  • Cytochrome c anchoring: Prevents cytochrome c release, a key step in apoptosis initiation
  • Membrane curvature: Maintains cristae architecture essential for oxidative phosphorylation
  • Protein import: Facilitates mitochondrial protein translocation

Cardiolipin is particularly susceptible to oxidative damage due to its high content of unsaturated fatty acids. Peroxidation of cardiolipin disrupts each of these functions and is a key event in mitochondrial dysfunction.

Mechanism of Action

SS-31 binds to cardiolipin through electrostatic and hydrophobic interactions:

  • The positively charged amino acid side chains interact with the negatively charged phosphate head groups of cardiolipin
  • The aromatic residues insert into the lipid bilayer adjacent to cardiolipin
  • This interaction stabilizes cardiolipin, protecting it from oxidative damage
  • Cytochrome c peroxidase activity is inhibited, preserving electron transport
  • Mitochondrial reactive oxygen species (ROS) production decreases

Research Applications

Current research investigates SS-31 in:

  • Ischemia-reperfusion injury models: Cardiac, renal, and cerebral protection
  • Heart failure research: Mitochondrial bioenergetics in failing myocardium
  • Neurodegenerative disease models: Mitochondrial dysfunction in Parkinson's and Alzheimer's
  • Aging research: Mitochondrial theories of aging and sarcopenia
  • Metabolic disease: Insulin resistance and mitochondrial efficiency

Experimental Considerations

  • SS-31 is water-soluble and cell-permeable without carrier molecules
  • Typical in vitro concentrations range from 1-100 nM
  • Effects on mitochondrial oxygen consumption can be measured using Seahorse or Oroboros instruments
  • In vivo research typically uses subcutaneous or intraperitoneal administration
  • Peptide stability in solution should be verified for long-term experiments

Malice Research Lab supplies SS-31 (2S10, 2S50) with verified purity for mitochondrial biology and cardioprotection research.

SS-31elamipretidemitochondrial targetingcardiolipinmitochondrial bioenergeticscardioprotectionoxidative stress

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